Stem-loop cfa-mir-346

Accession

MI0010397

Description

Canis lupus familiaris cfa-mir-346 precursor miRNA

Literature search

3 open access papers mention cfa-mir-346
(9 sentences)

Sequence

2709 reads, 17.0 reads per million, 34 experiments

ggucucuguggugggcgucUGUCUGCCCGCAUGCCUGCCUCUUuguugcucggaaggAGGCAGGGGCUGGGCCUGCAGCUGccugggcagagcgg
.(.((((((..((((((.((((..((((((...(((((((((((.........))))))))))).)).))))..)))).)))))).)))))))..

Structure

-g u      gg      u    CU    -  AUG           guu 
  g cucugu  ugggcg cUGU  GCCC GC   CCUGCCUCUUu   g
  | ||||||  |||||| ||||  |||| ||   |||||||||||   c
  c gagacg  guccGU GACG  CGGG CG   GGACGGAggaa   u
gg -      -g      C    UC    U  --G           ggc 

Annotation confidence High

Genome context

4: 34404379-34404473 [-]

Mature cfa-miR-346-5p

• Accession: MIMAT0009898
• Description: Canis lupus familiaris cfa-miR-346-5p mature miRNA
• Sequence: 20 - UGUCUGCCCGCAUGCCUGCCUCUU - 43
• Evidence: not_experimental

Mature cfa-miR-346-3p

• Accession: MIMAT0051938
• Description: Canis lupus familiaris cfa-miR-346-3p mature miRNA
• Sequence: 58 - AGGCAGGGGCUGGGCCUGCAGCUG - 81
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39