Stem-loop cfa-mir-488

Accession

MI0010402

Description

Canis lupus familiaris cfa-mir-488 precursor miRNA

Literature search

1 open access papers mention cfa-mir-488
(2 sentences)

Sequence

10581 reads, 44.0 reads per million, 60 experiments

gagaaucaucucuCCCAGAUAAUGGCACUCUCAAACaaguuuucaaguuguUUGAAAGGCUAUUUCUUGGUCagaagacucuc
((((.((.(((..((.(((.((((((.((.((((((((.((...)).)))))))).))))))))))).))..))).)).))))

Structure

    a  a   cu  C   U      A  C        g  u 
gaga uc ucu  CC AGA AAUGGC CU UCAAACaa uu  
|||| || |||  || ||| |||||| || |||||||| || u
cucu ag aga  GG UCU UUAUCG GA AGUUuguu aa  
    c  a   CU  U   -      -  A        g  c 

Annotation confidence High

Genome context

7: 22344624-22344706 [+]

Mature cfa-miR-488-5p

• Accession: MIMAT0009903
• Description: Canis lupus familiaris cfa-miR-488-5p mature miRNA
• Sequence: 14 - CCCAGAUAAUGGCACUCUCAAAC - 36
• Evidence: not_experimental

Mature cfa-miR-488-3p

• Accession: MIMAT0051943
• Description: Canis lupus familiaris cfa-miR-488-3p mature miRNA
• Sequence: 52 - UUGAAAGGCUAUUUCUUGGUC - 72
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39