Stem-loop cfa-mir-432

Accession

MI0010403

Description

Canis lupus familiaris cfa-mir-432 precursor miRNA

Literature search

1 open access papers mention cfa-mir-432
(2 sentences)

Sequence

70282 reads, 210.0 reads per million, 80 experiments

ugacuccuccaggUCUUGGAGUAGGUCAUUGGGUGGauccuuaauuucccuaugugggccaCUGGAUGGCUCCUCCAUGUCUUGGcg
........(((((.(.(((((..(((((((.(((((.(((...............)))))))).))))))).))))).).)))))..

Structure

ugacuccu     U U     UA       G     a   uuaauu 
        ccagg C UGGAG  GGUCAUU GGUGG ucc      u
        ||||| | |||||  ||||||| ||||| |||      c
        GGUUC G ACCUC  UCGGUAG UCacc ggg      c
------gc     U U     -C       G     -   uguauc 

Annotation confidence Medium

Genome context

8: 69389905-69389991 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cfa-mir-432

Mature cfa-miR-432-5p

• Accession: MIMAT0009904
• Description: Canis lupus familiaris cfa-miR-432-5p mature miRNA
• Sequence: 14 - UCUUGGAGUAGGUCAUUGGGUGG - 36
• Evidence: not_experimental

Mature cfa-miR-432-3p

• Accession: MIMAT0051944
• Description: Canis lupus familiaris cfa-miR-432-3p mature miRNA
• Sequence: 62 - CUGGAUGGCUCCUCCAUGUCUUGG - 85
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39