Stem-loop cfa-mir-494

Accession

MI0010404

Description

Canis lupus familiaris cfa-mir-494 precursor miRNA

Literature search

3 open access papers mention cfa-mir-494
(3 sentences)

Sequence

9808 reads, 72.0 reads per million, 73 experiments

gauacucgaaggagAGGUUGUCCGUGUUGUCUUCUCuuuauuuaugaUGAAACAUACACGGGAAACCUCUuuuuuaguauc
((((((.((((((((((((.((((((((((.(((((.........)).)))))).))))))).))))))))))))))))))

Structure

      c            G       -   C   -  uuu 
gauacu gaaggagAGGUU UCCGUGU UGU UUC UC   a
|||||| |||||||||||| ||||||| ||| ||| ||   u
cuauga uuuuuUCUCCAA GGGCACA ACA AAG ag   u
      -            A       U   -   U  uau 

Annotation confidence High

Genome context

8: 69543096-69543176 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from cfa-mir-494

Mature cfa-miR-494-5p

• Accession: MIMAT0051945
• Description: Canis lupus familiaris cfa-miR-494-5p mature miRNA
• Sequence: 15 - AGGUUGUCCGUGUUGUCUUCUC - 36
• Evidence: not_experimental

Mature cfa-miR-494-3p

• Accession: MIMAT0009905
• Description: Canis lupus familiaris cfa-miR-494-3p mature miRNA
• Sequence: 48 - UGAAACAUACACGGGAAACCUCU - 70
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39