miRBase entry: cfa-mir-504

Stem-loop cfa-mir-504


Accession
MI0010406
Description
Canis lupus familiaris cfa-mir-504 precursor miRNA


Sequence

27615 reads, 80.0 reads per million, 77 experiments
gcugcuguugggAGACCCUGGUCUGCACUCUAUCuguaugcuuacugaAGGGAGCGCAGGGCAGGGUUUCCcauacagagggc
(((.((((((((((((((((.(((((.((((.((.(((....))).))..)))).))))).)))))))))))).))))..)))

Structure
   -g    -            G     A    -A  u   u 
gcu  cugu ugggAGACCCUG UCUGC CUCU  UC gua g
|||  |||| |||||||||||| ||||| ||||  || |||  
cgg  gaca acCCUUUGGGAC GGACG GAGG  ag cau c
   ga    u            G     C    GA  u   u 


Annotation confidence High
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Genome context
X: 110679054-110679136 [-]

Database links

Mature cfa-miR-504-5p

Accession MIMAT0009907
Description Canis lupus familiaris cfa-miR-504-5p mature miRNA
Sequence 13 - AGACCCUGGUCUGCACUCUAUC - 34
Evidence not_experimental

Mature cfa-miR-504-3p

Accession MIMAT0051946
Description Canis lupus familiaris cfa-miR-504-3p mature miRNA
Sequence 49 - AGGGAGCGCAGGGCAGGGUUUCC - 71
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39