Stem-loop cfa-mir-505

Accession

MI0010407

Description

Canis lupus familiaris cfa-mir-505 precursor miRNA

Literature search

2 open access papers mention cfa-mir-505
(6 sentences)

Sequence

76539 reads, 168.0 reads per million, 82 experiments

caguggggGAGCCAGGAAGUAUUGAUGuuucugccaguuuAGCGUCAACACUUGCUGGUUUCCUcucuggagcauc
(((.(((((((((((.((((.((((((((...........)))))))).)))).))))))))))).))).......

Structure

-------   u           G    A        ucug 
       cag ggggGAGCCAG AAGU UUGAUGuu    c
       ||| ||||||||||| |||| ||||||||    c
       guc cUCCUUUGGUC UUCA AACUGCGA    a
cuacgag   u           G    C        uuug 

Annotation confidence High

Genome context

X: 111854674-111854749 [-]

Mature cfa-miR-505-5p

• Accession: MIMAT0009908
• Description: Canis lupus familiaris cfa-miR-505-5p mature miRNA
• Sequence: 9 - GAGCCAGGAAGUAUUGAUG - 27
• Evidence: not_experimental

Mature cfa-miR-505-3p

• Accession: MIMAT0051947
• Description: Canis lupus familiaris cfa-miR-505-3p mature miRNA
• Sequence: 41 - AGCGUCAACACUUGCUGGUUUCCU - 64
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39