miRBase entry: cfa-mir-539

Stem-loop cfa-mir-539

Accession

MI0010408

Description

Canis familiaris cfa-mir-539 precursor miRNA

Sequence

uacuugaGGAGAAAUUAUCCUUGGUGUGUucgcuguguuugugaggaaucauacaaggacaauuucuuuuugagua
((((((((((((((((.(((((((((..(((((.......)))))....))).)))))).))))))))))))))))

Structure

                A      -   --UG     ug 
uacuugaGGAGAAAUU UCCUUG GUG    Uucgc  u
|||||||||||||||| |||||| |||    |||||  g
augaguuuuucuuuaa aggaac uac    gagug  u
                c      a   uaag     uu

Annotation confidence Not enough data

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Genome context

chr8: 69276311-69276386 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from cfa-mir-539

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-539

Accession	MIMAT0009909
Description	Canis familiaris cfa-miR-539 mature miRNA
Sequence	8 - GGAGAAAUUAUCCUUGGUGUGU - 29
Evidence	not_experimental

References

PubMed ID: 18215311
miRNAminer: a tool for homologous microRNA gene search
"Artzi S, Kiezun A, Shomron N"
"BMC Bioinformatics (2008) 9:39