Stem-loop cfa-mir-539

Accession

MI0010408

Description

Canis lupus familiaris cfa-mir-539 precursor miRNA

Literature search

1 open access papers mention cfa-mir-539
(4 sentences)

Sequence

7957 reads, 38.0 reads per million, 60 experiments

uacuugaGGAGAAAUUAUCCUUGGUGUGUUcgcuguguuugugaggaauCAUACAAGGACAAUUUCUUUUUgagua
((((((((((((((((.(((((((((..(((((.......)))))....))).)))))).))))))))))))))))

Structure

                A      -   --UG     ug 
uacuugaGGAGAAAUU UCCUUG GUG    UUcgc  u
|||||||||||||||| |||||| |||    |||||  g
augagUUUUUCUUUAA AGGAAC UAC    gagug  u
                C      A   uaag     uu 

Annotation confidence High

Genome context

8: 69557959-69558034 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from cfa-mir-539

Mature cfa-miR-539-5p

• Accession: MIMAT0009909
• Description: Canis lupus familiaris cfa-miR-539-5p mature miRNA
• Sequence: 8 - GGAGAAAUUAUCCUUGGUGUGUU - 30
• Evidence: not_experimental

Mature cfa-miR-539-3p

• Accession: MIMAT0051948
• Description: Canis lupus familiaris cfa-miR-539-3p mature miRNA
• Sequence: 50 - CAUACAAGGACAAUUUCUUUUU - 71
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39