Stem-loop cfa-mir-544

Accession

MI0010409

Description

Canis lupus familiaris cfa-mir-544 precursor miRNA

Literature search

1 open access papers mention cfa-mir-544
(3 sentences)

Sequence

1524 reads, 20.0 reads per million, 44 experiments

auuuucaucaccuagggaUCUUGUUAAAAGGCAGAUUCUgauuuagggaccaagAUUCUGCAUUUUUAGCAAGUUCccaagugaugcua
.....((((((...((((.((((((((((((((((.(((.............))).))))).))))))))))).))))..))))))...

Structure

auuuu      cua    U           -     U   gauuu 
     caucac   ggga CUUGUUAAAAG GCAGA UCU     a
     ||||||   |||| ||||||||||| ||||| |||     g
     guagug   ccCU GAACGAUUUUU CGUCU Aga     g
--auc      -aa    U           A     U   accag 

Annotation confidence High

Genome context

8: 69559302-69559390 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from cfa-mir-544

Mature cfa-miR-544-5p

• Accession: MIMAT0051949
• Description: Canis lupus familiaris cfa-miR-544-5p mature miRNA
• Sequence: 19 - UCUUGUUAAAAGGCAGAUUCU - 39
• Evidence: not_experimental

Mature cfa-miR-544-3p

• Accession: MIMAT0009910
• Description: Canis lupus familiaris cfa-miR-544-3p mature miRNA
• Sequence: 55 - AUUCUGCAUUUUUAGCAAGUUC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39