miRBase entry: cfa-mir-545

Stem-loop cfa-mir-545

Accession

MI0010410

Description

Canis familiaris cfa-mir-545 precursor miRNA

Sequence

cccagccuggcacauuaguaggccUCAGUAAAUGUUUAUUGGAUGaauaaaugaaugacucaucaacaaacauuuaucgugugccugcuaaggugaucuccacagg
.....((((((((.((((((((((.(.((((((((((....(((((.............)))))...)))))))))).).).))))))))).))).....).))))

Structure

cccag    - -----   a         - U A          AUUG     auaaa 
     ccug g     cac uuaguaggc c C GUAAAUGUUU    GAUGa     u
     |||| |     ||| ||||||||| | | ||||||||||    |||||     g
     ggac c     gug aaucguccg g g uauuuacaaa    cuacu     a
-----    a cucua   g         u u c          -caa     cagua

Annotation confidence Not enough data

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Genome context

chrX: 57590201-57590306 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-545

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-545

Accession	MIMAT0009911
Description	Canis familiaris cfa-miR-545 mature miRNA
Sequence	25 - UCAGUAAAUGUUUAUUGGAUG - 45
Evidence	not_experimental

References

PubMed ID: 18215311
miRNAminer: a tool for homologous microRNA gene search
"Artzi S, Kiezun A, Shomron N"
"BMC Bioinformatics (2008) 9:39