Stem-loop cfa-mir-545

Accession

MI0010410

Description

Canis lupus familiaris cfa-mir-545 precursor miRNA

Literature search

1 open access papers mention cfa-mir-545
(1 sentences)

Sequence

725 reads, 2.0 reads per million, 66 experiments

cccagccuggcacauuaguaggCCUCAGUAAAUGUUUAUUGGAUGaauaaaugaaugacucaUCAACAAACAUUUAUCGUGUGCcugcuaaggugaucuccacagg
.....((((((((.((((((((((.(.((((((((((....(((((.............)))))...)))))))))).).).))))))))).))).....).))))

Structure

cccag    - -----   a         - U A          AUUG     auaaa 
     ccug g     cac uuaguaggC C C GUAAAUGUUU    GAUGa     u
     |||| |     ||| ||||||||| | | ||||||||||    |||||     g
     ggac c     gug aaucgucCG G G UAUUUACAAA    CUacu     a
-----    a cucua   g         U U C          -CAA     cagua 

Annotation confidence High

Genome context

X: 58804554-58804659 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-545

Mature cfa-miR-545-5p

• Accession: MIMAT0009911
• Description: Canis lupus familiaris cfa-miR-545-5p mature miRNA
• Sequence: 23 - CCUCAGUAAAUGUUUAUUGGAUG - 45
• Evidence: not_experimental

Mature cfa-miR-545-3p

• Accession: MIMAT0051950
• Description: Canis lupus familiaris cfa-miR-545-3p mature miRNA
• Sequence: 63 - UCAACAAACAUUUAUCGUGUGC - 84
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39