miRBase entry: cfa-mir-551a

Stem-loop cfa-mir-551a


Accession
MI0010411
Description
Canis lupus familiaris cfa-mir-551a precursor miRNA


Sequence

5082 reads, 8.0 reads per million, 67 experiments
ggggacugccaggugacccugGAAAUCCAGAGUGGGUAAGGCCUgucugauugugucuagGCGACCCACUCUUGGUUUCCAugguugcccugga
........((((((((((.((((((((.(((((((((...(((((...(((...)))))))).))))))))).)))))))).))))).))))).

Structure
ggggacug     -     c        C         AAG     ucu   u 
        ccagg ugacc ugGAAAUC AGAGUGGGU   GCCUg   gau  
        ||||| ||||| |||||||| |||||||||   |||||   ||| g
        ggucc guugg ACCUUUGG UCUCACCCA   CGgau   cug  
-------a     c     u        U         --G     ---   u 


Annotation confidence High
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Genome context
5: 58313757-58313850 [-]

Database links

Mature cfa-miR-551a-5p

Accession MIMAT0051951
Description Canis lupus familiaris cfa-miR-551a-5p mature miRNA
Sequence 22 - GAAAUCCAGAGUGGGUAAGGCCU - 44
Evidence not_experimental

Mature cfa-miR-551a-3p

Accession MIMAT0009912
Description Canis lupus familiaris cfa-miR-551a-3p mature miRNA
Sequence 61 - GCGACCCACUCUUGGUUUCCA - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39