Stem-loop cfa-mir-551b

Accession

MI0010412

Description

Canis lupus familiaris cfa-mir-551b precursor miRNA

Literature search

1 open access papers mention cfa-mir-551b
(2 sentences)

Sequence

13266 reads, 42.0 reads per million, 63 experiments

gugcucuccuggcccauGAAAUCAAGUGUGGGUGAGACCUggugcacagcgggaagGCGACCCAUACUUGGUUUCAGaggcugcgagaau
....((((.(((((..(((((((((((((((((..(.(((..(((...)))...)))).)))))))))))))))))..))))).))))..

Structure

gugc    c     ca                 GA A   -gg   a 
    ucuc uggcc  uGAAAUCAAGUGUGGGU  G CCU   ugc  
    |||| |||||  |||||||||||||||||  | |||   ||| c
    agag gucgg  ACUUUGGUUCAUACCCA  C Gga   gcg  
--ua    c     aG                 -G -   agg   a 

Annotation confidence High

Genome context

34: 33370107-33370196 [+]

Mature cfa-miR-551b-5p

• Accession: MIMAT0051952
• Description: Canis lupus familiaris cfa-miR-551b-5p mature miRNA
• Sequence: 18 - GAAAUCAAGUGUGGGUGAGACCU - 40
• Evidence: not_experimental

Mature cfa-miR-551b-3p

• Accession: MIMAT0009913
• Description: Canis lupus familiaris cfa-miR-551b-3p mature miRNA
• Sequence: 57 - GCGACCCAUACUUGGUUUCAG - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39