Stem-loop cfa-mir-599

Accession

MI0010418

Description

Canis lupus familiaris cfa-mir-599 precursor miRNA

Literature search

1 open access papers mention cfa-mir-599
(5 sentences)

Sequence

434 reads, 1.0 reads per million, 44 experiments

aaagaccugcuguccacaguguguuugauaagcugacaugggacagggauucuuuucacuGUUGUGUCAGUUUAUCAAACccauaccuggaugac
...........(((((..(((.(((((((((((((((((..((((((((.....))).)))))))))))))))))))))).)))...)))))...

Structure

aaagaccugcu     -ca   u                 gg     -   u 
           gucca   gug guuugauaagcugacau  gacag gga u
           |||||   ||| |||||||||||||||||  ||||| ||| c
           uaggu   uac CAAACUAUUUGACUGUG  UUGuc cuu u
--------cag     cca   c                 --     a   u 

Annotation confidence Not enough data

Genome context

13: 1691779-1691873 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-599

Mature cfa-miR-599-3p

• Accession: MIMAT0009919
• Description: Canis lupus familiaris cfa-miR-599-3p mature miRNA
• Sequence: 61 - GUUGUGUCAGUUUAUCAAAC - 80
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39