miRBase entry: cfa-mir-628

Stem-loop cfa-mir-628


Accession
MI0010420
Description
Canis lupus familiaris cfa-mir-628 precursor miRNA


Sequence

68972 reads, 201.0 reads per million, 81 experiments
auagcuguugugucacuuccucAUGCUGACAUAUUUACUAGAGGguaaaauuaauaaccuUCUAGUAAGAGUGGCAGUCGAAGggaagggcucau
........((.(((.((((((...((((.(((.(((((((((((((..........))))))))))))).))).))))....))))))))).)).

Structure
auagcugu  u   a      -cAU    A   A             aaaa 
        ug guc cuuccu    GCUG CAU UUUACUAGAGGgu    u
        || ||| ||||||    |||| ||| |||||||||||||     
        ac cgg gaaggG    UGAC GUG GAAUGAUCUucca    u
-------u  u   -      AAGC    G   A             auaa 


Annotation confidence High
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Genome context
30: 20918660-20918754 [-]

Database links

Mature cfa-miR-628-5p

Accession MIMAT0009921
Description Canis lupus familiaris cfa-miR-628-5p mature miRNA
Sequence 23 - AUGCUGACAUAUUUACUAGAGG - 44
Evidence not_experimental

Mature cfa-miR-628-3p

Accession MIMAT0051955
Description Canis lupus familiaris cfa-miR-628-3p mature miRNA
Sequence 61 - UCUAGUAAGAGUGGCAGUCGAAG - 83
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39