Stem-loop cfa-mir-653

Accession

MI0010423

Description

Canis lupus familiaris cfa-mir-653 precursor miRNA

Literature search

1 open access papers mention cfa-mir-653
(1 sentences)

Sequence

1033 reads, 9.0 reads per million, 40 experiments

ucauuccuucagugUUGAAACAAUCUCUAUUGAACCaggcuccaaaccaagUUCACUGGAGUUUGUUUCAAUAuugcaagaaugauaagau
((((((...((((((((((((((.(((((.(((((..((.......))..))))).))))).))))))))))))))...))))))......

Structure

------      cuu              U     U     Ca  cu 
      ucauuc   cagugUUGAAACAA CUCUA UGAAC  gg  c
      ||||||   |||||||||||||| ||||| |||||  ||  c
      aguaag   guuAUAACUUUGUU GAGGU ACUUg  cc  a
uagaau      aac              U     C     aa  aa 

Annotation confidence High

Genome context

14: 18786503-18786593 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-653

Mature cfa-miR-653-5p

• Accession: MIMAT0009924
• Description: Canis lupus familiaris cfa-miR-653-5p mature miRNA
• Sequence: 15 - UUGAAACAAUCUCUAUUGAACC - 36
• Evidence: not_experimental

Mature cfa-miR-653-3p

• Accession: MIMAT0051956
• Description: Canis lupus familiaris cfa-miR-653-3p mature miRNA
• Sequence: 52 - UUCACUGGAGUUUGUUUCAAUA - 73
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39