Stem-loop cfa-mir-671

Accession

MI0010425

Description

Canis lupus familiaris cfa-mir-671 precursor miRNA

Literature search

2 open access papers mention cfa-mir-671
(2 sentences)

Sequence

34285 reads, 55.0 reads per million, 82 experiments

caggaagaggAGGAAGCCCUGGAGGGGCUGGAGGugauggauguuuuccUCCGGUUCUCAGGGCUCCACCUcuu
....((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).))))))

Structure

cagg      A   A      GA           u  ug 
    aagagg GGA GCCCUG  GGGGCUGGAGG ga  g
    |||||| ||| ||||||  ||||||||||| ||  a
    uucUCC CCU CGGGAC  UCUUGGCCUcc uu  u
----      A   -      --           u  ug 

Annotation confidence High

Genome context

16: 17001171-17001244 [+]

Mature cfa-miR-671-5p

• Accession: MIMAT0051958
• Description: Canis lupus familiaris cfa-miR-671-5p mature miRNA
• Sequence: 11 - AGGAAGCCCUGGAGGGGCUGGAGG - 34
• Evidence: not_experimental

Mature cfa-miR-671-3p

• Accession: MIMAT0009926
• Description: Canis lupus familiaris cfa-miR-671-3p mature miRNA
• Sequence: 50 - UCCGGUUCUCAGGGCUCCACCU - 71
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39