miRBase entry: cfa-mir-454

Stem-loop cfa-mir-454


Accession
MI0010426
Description
Canis lupus familiaris cfa-mir-454 precursor miRNA


Sequence

11215 reads, 21.0 reads per million, 80 experiments
agaACCCUAUCGAUAUUGUCUCUGCuguguaaauagcucugagUAGUGCAAUAUUGCUUAUAGGGUUuug
((((((((((((((((((((((.(((((....)))))...)))....)))))))))...)))))))))).

Structure
-          ---         ----   --U     g 
 agaACCCUAU   CGAUAUUGU    CUC   GCugu u
 ||||||||||   |||||||||    |||   |||||  
 uuUUGGGAUA   GUUAUAACG    gag   cgaua a
g          UUC         UGAU   ucu     a 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
9: 34519572-34519641 [-]

Database links

Mature cfa-miR-454-5p

Accession MIMAT0051959
Description Canis lupus familiaris cfa-miR-454-5p mature miRNA
Sequence 4 - ACCCUAUCGAUAUUGUCUCUGC - 25
Evidence not_experimental

Mature cfa-miR-454-3p

Accession MIMAT0009927
Description Canis lupus familiaris cfa-miR-454-3p mature miRNA
Sequence 44 - UAGUGCAAUAUUGCUUAUAGGGUU - 67
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39