Stem-loop cfa-mir-874

Accession

MI0010429

Description

Canis lupus familiaris cfa-mir-874 precursor miRNA

Literature search

3 open access papers mention cfa-mir-874
(14 sentences)

Sequence

119654 reads, 342.0 reads per million, 81 experiments

uuagcccugCGGCCCCACGCACCAGGGUAAGagagacucucgcuucCUGCCCUGGCCCGAGGGACCGAcuggcugggc
((((((...(((.(((.((..((((((((((.(((...))).))...))))))))..)).))).)))...))))))..

Structure

--      cug   C   A  CA        ---  a   a 
  uuagcc   CGG CCC CG  CCAGGGUA   AG gag  
  ||||||   ||| ||| ||  ||||||||   || ||| c
  ggucgg   GCC GGG GC  GGUCCCGU   uc cuc  
cg      ucA   A   A  CC        Ccu  g   u 

Annotation confidence High

Genome context

11: 26199027-26199104 [-]

Mature cfa-miR-874-5p

• Accession: MIMAT0051961
• Description: Canis lupus familiaris cfa-miR-874-5p mature miRNA
• Sequence: 10 - CGGCCCCACGCACCAGGGUAAG - 31
• Evidence: not_experimental

Mature cfa-miR-874-3p

• Accession: MIMAT0009930
• Description: Canis lupus familiaris cfa-miR-874-3p mature miRNA
• Sequence: 47 - CUGCCCUGGCCCGAGGGACCGA - 68
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39