Stem-loop cfa-mir-885

Accession

MI0010432

Description

Canis lupus familiaris cfa-mir-885 precursor miRNA

Literature search

2 open access papers mention cfa-mir-885
(9 sentences)

Sequence

61724 reads, 183.0 reads per million, 69 experiments

ccgcgcucucUCCAUUACACUACCCUGCCUCUUcuccaugagAGGCAGCGGGGUGUAGUGGAUAgagcacgggu
(((.(((((.(((((((((((.(((((((((((......))))))))).))))))))))))).))))).)))..

Structure

--   c     c           A  -         cu 
  ccg gcucu UCCAUUACACU CC CUGCCUCUU  c
  ||| ||||| ||||||||||| || |||||||||   
  ggc cgagA AGGUGAUGUGG GG GACGGAgag  c
ug   a     U           -  C         ua 

Annotation confidence High

Genome context

20: 7998461-7998534 [+]

Mature cfa-miR-885-5p

• Accession: MIMAT0009933
• Description: Canis lupus familiaris cfa-miR-885-5p mature miRNA
• Sequence: 11 - UCCAUUACACUACCCUGCCUCUU - 33
• Evidence: not_experimental

Mature cfa-miR-885-3p

• Accession: MIMAT0051963
• Description: Canis lupus familiaris cfa-miR-885-3p mature miRNA
• Sequence: 43 - AGGCAGCGGGGUGUAGUGGAUA - 64
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39