miRBase entry: cfa-mir-665

Stem-loop cfa-mir-665


Accession
MI0010433
Description
Canis lupus familiaris cfa-mir-665 precursor miRNA


Sequence

1 reads, 12.0 reads per million, 1 experiments
ucccgcggccucagccuccacccggggcucuguccggACCAGGAGGCUAAGGCCCCUcacggcggcug
..(((((((((.(((((((..(((((......)))))....))))))).))))).......))))...

Structure
-uc    -------     c       --ac     gc 
   ccgc       ggccu agccucc    ccggg  u
   ||||       ||||| |||||||    |||||   
   ggcg       CCGGA UCGGAGG    ggccu  c
guc    gcacUCC     A       ACCA     gu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
8: 69381314-69381381 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from cfa-mir-665
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-665-3p

Accession MIMAT0009934
Description Canis lupus familiaris cfa-miR-665-3p mature miRNA
Sequence 38 - ACCAGGAGGCUAAGGCCCCU - 57
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39