miRBase entry: bfl-mir-125b

Stem-loop bfl-mir-125b

Accession

MI0010518

Description

Branchiostoma floridae bfl-mir-125b precursor miRNA

Sequence

guggagggcguaugucacccagcucccaagauccuaaccugugagccauggacaUCACAAGUUAGGGUCUCAGGGAaugggg
......(((....))).((((..((((.((((((((((.(((((..........))))).))))))))))..)))).)))).

Structure

guggagggcguauguca    gc    -a          c     gcca 
                 ccca  uccc  agauccuaac uguga    u
                 ||||  ||||  |||||||||| |||||     
                 gggu  AGGG  UCUGGGAUUG ACACU    g
----------------g    -a    AC          A     acag

Annotation confidence Not enough data

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Genome context

GG666478.1: 2707563-2707644 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from bfl-mir-125b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bfl-miR-125b

Accession	MIMAT0010007
Description	Branchiostoma floridae bfl-miR-125b mature miRNA
Sequence	55 - UCACAAGUUAGGGUCUCAGGGA - 76
Evidence	experimental cloned [1]

References

PubMed ID: 19196332
Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution
"Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L"
"Evol Dev (2009) 11:41-49