Stem-loop bfl-mir-92c

Accession

MI0010524

Description

Branchiostoma floridae bfl-mir-92c precursor miRNA

Literature search

1 open access papers mention bfl-mir-92c
(3 sentences)

Sequence

uagagggcagggagggaauuuugaagugauuguguuuguaaaauuuagcgguuuuguuuuuggcgggaaggucgggagaagaaacaauguuuccaaccgaUAUUGCACUUGUCCCGGCUUGCcugcugccgccaucuugcuccagacaugacuuugucacuucuuuauuuuaagccacccguucugcaguguuucuucuc
.(((((((((((.((((((...((((((((((((((((.........(((((.........((((((.(((((((((.(((...(((((((.......)))))))..))).))))))))).)))))))))))..........)))))))).....))))))))...)))........))).)))))).......))))).

Structure

u     -------      a   --------   uuu        -----        -uaaaauuua     uuuguuuuu      a         g   aaa       uc 
 agagg       gcaggg ggg        aau   gaagugau     uguguuug          gcggu         ggcggg aggucggga aag   caauguu  c
 |||||       |||||| |||        |||   ||||||||     ||||||||          |||||         |||||| ||||||||| |||   |||||||  a
 ucuuc       cgucuu ccc        uua   cuucacug     guacagac          cgccg         ucgucC UUCGGCCCU UUC   GUUAUag  a
c     uuuguga      g   accgaauu   uuu        uuuca        cucguucuac     ---------      G         G   -AC       cc 

Annotation confidence Not enough data

Genome context

ref|NC_049981.1|: 13638952-13639151 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bfl-mir-92c

Mature bfl-miR-92c-3p

• Accession: MIMAT0010010
• Description: Branchiostoma floridae bfl-miR-92c-3p mature miRNA
• Sequence: 101 - UAUUGCACUUGUCCCGGCUUGC - 122
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 19196332
   Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution
   "Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L"
   "Evol Dev (2009) 11:41-49