Stem-loop ppt-MIR2078

Accession

MI0010530

Description

Physcomitrella patens ppt-MIR2078 precursor miRNA

Sequence

ggaggauuacugauauauucuagcacggcaagagagguggcaagccucauguacaggcacaggcaagccaacccuggggaucaacucguucaguugaacugagcuagcugagagGGUUGGCUUGCCUGUGCCUGUacaugagacugagccgagauuaaacccuagggaucgacucg
.((((((..(((......(((.((...)).)))....((((.((.((((((((((((((((((((((((((((((.....(((.((.(((((((...))))))).)).))).)))))))))))))))))))))))))))))).))..))))...........)))..)))..))).

Structure

g   --   ua   auauauucuagcacggcaagagagg    -a  c                              gggga   a  c       u 
 gag  gau  cug                         uggc  ag cucauguacaggcacaggcaagccaacccu     uca cu guucagu  
 |||  |||  |||                         ||||  || ||||||||||||||||||||||||||||||     ||| || ||||||| g
 cuc  cua  gau                         gccg  uc gaguacaUGUCCGUGUCCGUUCGGUUGGga     agu ga cgaguca  
g   ag   gg   --------------cccaaauuaga    ag  a                              ----g   c  u       a 

Annotation confidence Not enough data

Genome context

Chr27: 5212048-5212223 [+]

Mature ppt-miR2078

• Accession: MIMAT0010015
• Description: Physcomitrella patens ppt-miR2078 mature miRNA
• Sequence: 115 - GGUUGGCUUGCCUGUGCCUGU - 135
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19096705
   Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development
   Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ
   PLoS Genet (2008) 4:e1000314