Stem-loop ppt-MIR2080

Accession

MI0010532

Description

Physcomitrella patens ppt-MIR2080 precursor miRNA

Sequence

26424 reads, 1186.0 reads per million, 10 experiments

gcugcguguuuguuaagugagaaauUCCAUAUCAAUUCGCAGAUGCcgcuucagaacugguuuuacguuccaguUCUGAAGCGGCAUCUGCGAAUUgauauggaauuucugggacguguaggguuuagc
.(((((((((.......(.(((((((((((((((((((((((((((((((((((((((((.........))))))))))))))))))))))))))))))))))))))))).))))))))))........

Structure

-------g         uguuaag g                                         uuu 
        cugcguguu       u agaaauUCCAUAUCAAUUCGCAGAUGCcgcuucagaacugg   u
        |||||||||       | |||||||||||||||||||||||||||||||||||||||||   a
        gaugugcag       g ucuuuaagguauagUUAAGCGUCUACGGCGAAGUCUugacc   c
cgauuugg         ------- g                                         uug 

Annotation confidence Medium

Genome context

Chr09: 2064958-2065086 [+]

Mature ppt-miR2080-5p

• Accession: MIMAT0010017
• Description: Physcomitrella patens ppt-miR2080-5p mature miRNA
• Sequence: 26 - UCCAUAUCAAUUCGCAGAUGC - 46
• Evidence: experimental ; Illumina [1]

Mature ppt-miR2080-3p

• Accession: MIMAT0053779
• Description: Physcomitrella patens ppt-miR2080-3p mature miRNA
• Sequence: 75 - UCUGAAGCGGCAUCUGCGAAUU - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 19096705
   Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development
   Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ
   PLoS Genet (2008) 4:e1000314