Stem-loop ppt-MIR2082

Accession

MI0010536

Description

Physcomitrella patens ppt-MIR2082 precursor miRNA

Sequence

cucguccacaucuugccgcuccagauUGUGUGUUCCGCUUCUUCUUUcgucaugcauguccuccacagaucaagcaugauagaagaagaagcggcuuacgcaaucugggacggagaugcaugaguucugag
(((((...(((((..(((.(((((((((((((..(((((((((((((.(((((((.((..((....))..)).))))))).)))))))))))))..))))))))))))).)))))))).))))).......

Structure

-------     cca     ug   c             UU             c       a  uc  c 
       cucgu   caucu  ccg uccagauUGUGUG  CCGCUUCUUCUUU gucaugc ug  cu c
       |||||   |||||  ||| |||||||||||||  ||||||||||||| ||||||| ||  ||  
       gagua   guaga  ggc gggucuaacgcau  ggcgaagaagaag uaguacg ac  ga a
gagucuu     --c     --   a             uc             a       a  ua  c 

Annotation confidence Not enough data

Genome context

Chr21: 5914145-5914275 [-]

Mature ppt-miR2082

• Accession: MIMAT0010021
• Description: Physcomitrella patens ppt-miR2082 mature miRNA
• Sequence: 27 - UGUGUGUUCCGCUUCUUCUUU - 47
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19096705
   Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development
   Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ
   PLoS Genet (2008) 4:e1000314