Stem-loop ppt-MIR1023e

Accession

MI0010538

Description

Physcomitrella patens ppt-MIR1023e precursor miRNA

Sequence

acagcuuugaaugucaucauACACUCUCUCCGUUUCCCUUCcgaaucguuuuuccccucaugcacuggaaacuguuggaAGGGAAUCGGGUGGAGUGCAUcaugaucugcaagcuccgac
..(((((.(...(((((.((.((((((.((((.(((((((((((......(((((...........)))))...))))))))))).)))).)))))).)).)))))...)))))).....

Structure

---ac     u aau     c  A      C    U           aucguu     ccuc 
     agcuu g   gucau au CACUCU UCCG UUCCCUUCcga      uuucc    a
     ||||| |   ||||| || |||||| |||| |||||||||||      |||||    u
     ucgaa c   uagua UA GUGAGG GGGC AAGGGAagguu      aaagg    g
cagcc     - guc     c  C      U    U           ---guc     ucac 

Annotation confidence Not enough data

Genome context

Chr10: 3221227-3221346 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1023e

Mature ppt-miR1023e-5p

• Accession: MIMAT0010024
• Description: Physcomitrella patens ppt-miR1023e-5p mature miRNA
• Sequence: 21 - ACACUCUCUCCGUUUCCCUUC - 41
• Evidence: experimental ; Illumina [1]

Mature ppt-miR1023e-3p

• Accession: MIMAT0010025
• Description: Physcomitrella patens ppt-miR1023e-3p mature miRNA
• Sequence: 80 - AGGGAAUCGGGUGGAGUGCAU - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19096705
   Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development
   Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ
   PLoS Genet (2008) 4:e1000314