Stem-loop mtr-MIR1507

Accession

MI0010541

Description

Medicago truncatula mtr-MIR1507 precursor miRNA

Literature search

4 open access papers mention mtr-MIR1507
(13 sentences)

Sequence

accauaaacuccaauuaaugugguguugaguAGAGUUGUAUGGAACGAAAGAUgggaauuucuuguugaauucuauucauucaauuuucccucCCUCGUUCCAUACAUCAUCUAGccaauacuguguuaacaauugucuuuggu
((((...((.....((((((((((((((..(((((.((((((((((((..((.(((((....(((.(((((...)))))..)))..)))))))..)))))))))))).).))))..)))))))))))))).....))...))))

Structure

    uaa  uccaa              ag    - U            AA  U     uuuc   -u     u 
acca   ac     uuaaugugguguug  uAGA G UGUAUGGAACGA  GA gggaa    uug  ugaau  
||||   ||     ||||||||||||||  |||| | ||||||||||||  || |||||    |||  ||||| c
uggu   ug     aauugugucauaac  AUCU C ACAUACCUUGCU  cu cccuu    aac  acuua  
    uuc  uuaac              cG    A U            CC  -     --uu   uu     u 

Annotation confidence Not enough data

Genome context

chr4: 46264970-46265113 [+]

Mature mtr-miR1507-5p

• Accession: MIMAT0010030
• Description: Medicago truncatula mtr-miR1507-5p mature miRNA
• Sequence: 32 - AGAGUUGUAUGGAACGAAAGAU - 53
• Evidence: experimental ; Illumina [1], Northern [1]

Mature mtr-miR1507-3p

• Accession: MIMAT0010031
• Description: Medicago truncatula mtr-miR1507-3p mature miRNA
• Sequence: 94 - CCUCGUUCCAUACAUCAUCUAG - 115
• Evidence: experimental ; Illumina [1], Northern [1-2], 454 [2]

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. PubMed ID: 19068109
   High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
   Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T
   BMC Genomics (2008) 9:593