Stem-loop mtr-MIR1509a

Accession

MI0010543

Description

Medicago truncatula mtr-MIR1509a precursor miRNA

Literature search

2 open access papers mention mtr-MIR1509a
(4 sentences)

Sequence

cccggccucucucuugccucauagcuaguuaggguuuucguugcugucucguguuuucuuuugauccauucaauuuuuUUAAUCUAGGAAAAUACGGUGgagaggguuuuucuuuuuauuguuugagauugauaucucucgucuucucuACCGGAUUUCCUUGAUUAAAGaaauuuacugguucauuauuauuuuuuagcuaugaugacaauguguaucccagcucauuaugaggccuuuuuguaaggucuggg
((((((((..(....(((((((((..((((.((((...(((...(((((((((((......(((.(((...(((((((((((((.((((((...((((((((((((..................(((((....)))))...))))))))))))..)))))).)))))))))))))...))).)))............))).)))).)))))))...)))).))))..)))))))))......)..))).)))))

Structure

     -   cu --ucuu         cu    a    uuu   ugc    -    -   ------uucuuu   u   uuc             U      AUA            uuuuucuuuuuauuguuu     u 
cccgg ccu  c      gccucauag  aguu gggu   cgu   uguc ucgu guu            uga cca   aauuuuuUUAAUC AGGAAA   CGGUGgagaggg                  gagau g
||||| |||  |      |||||||||  |||| ||||   |||   |||| |||| |||            ||| |||   ||||||||||||| ||||||   ||||||||||||                  |||||  
ggguc gga  g      cggaguauu  ucga ccua   gua   acag agua cga            acu ggu   uuaaaGAAAUUAG UCCUUU   GCCAucucuucu                  cucua a
     u   au uuuuuc         ac    c    ugu   ---    u    u   uuuuuuauuauu   u   cau             U      -AG            ---------------gcu     u 

Annotation confidence Not enough data

Genome context

chr7: 36253579-36253832 [+]

Mature mtr-miR1509a-5p

• Accession: MIMAT0010034
• Description: Medicago truncatula mtr-miR1509a-5p mature miRNA
• Sequence: 79 - UUAAUCUAGGAAAAUACGGUG - 99
• Evidence: experimental ; Illumina [1-2], Northern [1]

Mature mtr-miR1509a-3p

• Accession: MIMAT0010035
• Description: Medicago truncatula mtr-miR1509a-3p mature miRNA
• Sequence: 150 - ACCGGAUUUCCUUGAUUAAAG - 170
• Evidence: experimental ; Illumina [1], Northern [1]

References

1. PubMed ID: 19068109
   High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
   Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T
   BMC Genomics (2008) 9:593


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553