miRBase entry: osa-MIR2100

Dead hairpin entry

Stem-loop osa-MIR2100


Accession
MI0010560
Description
Oryza sativa osa-MIR2100 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

8950 reads, 43.0 reads per million, 129 experiments
uucccuucucucaaguugccaaacaagccaAGUUGCCAAACAAGCCGUaggguggguggggaagaucggaagaagcggcacucgaucgcuauuuuuuuucuuuuuaccgaucucuuucuguaaccgcuGUUUAGGCGGAGUGGGGAGUGGGAa
.((((..(((((...((((((((((.((...(((((...((..(((....)))..))((((((((((((((((((.(((........))).........)))))).))))))).)))))))))).))))))).)))))....))))).)))).

Structure
u    uu     -aag     -     a  caA     -----------------------------------------------------------CAA  AA   G 
 uccc  cucuc    uugcc aaaca gc   GUUGC                                                              AC  GCC U
 ||||  |||||    ||||| ||||| ||   |||||                                                              ||  |||  
 AGGG  GAGGG    GGCGG UUUGu cg   caaug                                                              ug  ugg a
a    -U     GUGA     A     -  --c     ucuuucucuagccauuuuucuuuuuuuuaucgcuagcucacggcgaagaaggcuagaagggg  gg   g