Stem-loop osa-MIR2100

Accession

MI0010560

Description

Oryza sativa osa-MIR2100 precursor miRNA

Sequence

uucccUUCUCUCAAGUUGCCAAACAAGccaaguugccaaacaagccguaggguggguggggaagaucggaagaagcggcacucgaucgcuauuuuuuuucuuuuuaccgaucucuuucuguAACCGCUGUUUAGGCGGAGUGGggagugggaa
.((((..(((((...((((((((((.((...(((((...((..(((....)))..))((((((((((((((((((.(((........))).........)))))).))))))).)))))))))).))))))).)))))....))))).)))).

Structure

u    UU     -AAG     -     A  caa     caaacaagccguagggugggu     -       -      --------c   acu 
 uccc  CUCUC    UUGCC AAACA Gc   guugc                     gggga agaucgg aagaag         ggc   c
 ||||  |||||    ||||| ||||| ||   |||||                     ||||| ||||||| ||||||         |||    
 aggg  gaggG    GGCGG UUUGU CG   CAAug                     ucuuu ucuagcc uuuuuc         ucg   g
a    -u     GUGA     A     -  --C     ---------------------     c       a      uuuuuuuua   cua 

Annotation confidence Not enough data

Genome context

Chr11: 16194999-16195151 [-]

Mature osa-miR2100-5p

• Accession: MIMAT0010064
• Description: Oryza sativa osa-miR2100-5p mature miRNA
• Sequence: 6 - UUCUCUCAAGUUGCCAAACAAG - 27
• Evidence: experimental ; Illumina [1]

Mature osa-miR2100-3p

• Accession: MIMAT0010065
• Description: Oryza sativa osa-miR2100-3p mature miRNA
• Sequence: 122 - AACCGCUGUUUAGGCGGAGUGG - 143
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930