Stem-loop gma-MIR396c

Accession

MI0010572

Description

Glycine max gma-MIR396c precursor miRNA

Literature search

25 open access papers mention gma-MIR396c
(147 sentences)

Sequence

10892675 reads, 23689.0 reads per million, 178 experiments

caacaaguccuguuaugcuuUUCCACAGCUUUCUUGAACUUcuuaugccuagugcaauuauugauguggcauagaaGUUUAAGAAAAAUGUGGAAAAacaugucaaaucuaggacuu
....((((((((.((((.(((((((((..((((((((((((((.(((((..((.(((...)))))..)))))))))))))))))))..))))))))).)))).......))))))))

Structure

caac        ------u    c         GC              u     ua  g   u 
    aaguccug       uaug uuUUCCACA  UUUCUUGAACUUcu augcc  gu caa  
    ||||||||       |||| |||||||||  |||||||||||||| |||||  || ||| u
    uucaggau       guac AAAAGGUGU  AAAGAAUUUGaaga uacgg  ua guu  
----        cuaaacu    a         AA              -     ug  -   a 

Annotation confidence High

Genome context

chr13: 45239131-45239247 [+]

Mature gma-miR396c-5p

• Accession: MIMAT0010079
• Description: Glycine max gma-miR396c-5p mature miRNA
• Sequence: 21 - UUCCACAGCUUUCUUGAACUU - 41
• Evidence: experimental ; cloned [1], 454 [2]

Mature gma-miR396c-3p

• Accession: MIMAT0054050
• Description: Glycine max gma-miR396c-3p mature miRNA
• Sequence: 77 - GUUUAAGAAAAAUGUGGAAAA - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 19084500
   Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
   "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
   "Biochem Biophys Res Commun (2009) 378:799-803


2. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506