Stem-loop ath-MIR2111a

Accession

MI0010630

Description

Arabidopsis thaliana ath-MIR2111a precursor miRNA

Literature search

4 open access papers mention ath-MIR2111a
(12 sentences)

Sequence

cgaugaugaguauuggugaggaccgggUAAUCUGCAUCCUGAGGUUUAaagcuuaauuuacgcaggaaauuuguauacgcauauacguauguguauuaguauaccuuuuaGUCCUCGGGAUGCGGAUUACCucguucuuacuuacaauacacguacucg
(((..(((.((((((((((((((.((((((((((((((((((((.(((((((.........)).........((((((..((((((....))))))..))))))..))))).)))))))))))))))))))).))))))))...)))))).)))..)))

Structure

   ug   a      ---        c                    U     gcuuaauuuacgcaggaaauuu      gc      g 
cga  aug guauug   gugaggac gggUAAUCUGCAUCCUGAGG UUAaa                      guauac  auauac u
|||  ||| ||||||   |||||||| |||||||||||||||||||| |||||                      ||||||  ||||||  
gcu  ugc cauaac   cauucuug uCCAUUAGGCGUAGGGCUCC Gauuu                      cauaug  uaugug a
   ca   a      auu        c                    U     --------------------uc      au      u 

Annotation confidence Not enough data

Genome context

chr3: 2854284-2854442 [+]

Mature ath-miR2111a-5p

• Accession: MIMAT0011150
• Description: Arabidopsis thaliana ath-miR2111a-5p mature miRNA
• Sequence: 28 - UAAUCUGCAUCCUGAGGUUUA - 48
• Evidence: experimental ; Illumina [1-3]

Mature ath-miR2111a-3p

• Accession: MIMAT0011151
• Description: Arabidopsis thaliana ath-miR2111a-3p mature miRNA
• Sequence: 111 - GUCCUCGGGAUGCGGAUUACC - 131
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19307293
   Computational and analytical framework for small RNA profiling by high-throughput sequencing
   "Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC"
   "RNA (2009) 15:992-1002


2. PubMed ID: 19465578
   Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing
   "Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR"
   "Plant Physiol (2009) 150:1541-1555


3. PubMed ID: 19854858
   Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
   "Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ"
   "Plant Physiol (2009) 151:2120-2132