Stem-loop ath-MIR2111b

Accession

MI0010631

Description

Arabidopsis thaliana ath-MIR2111b precursor miRNA

Literature search

4 open access papers mention ath-MIR2111b
(12 sentences)

Sequence

caacaacacgaagaagaagaugaagguacuugaugaugaacgggUAAUCUGCAUCCUGAGGUUUAaaaccaauuaagcauauacauaugcgaauguauaguuuuuaAUCCUCGGGAUACAGUUUACCucuuccuuacucaagaaaacacuuagcuuuaacgguuuug
....(((.((..((((......(((((.((((((((.(((.((((((.(((.(((((((((.((((((........((.(((((((......))))))))))))))).))))))))).))).)))))).))).))).)))))...)).)))..))))..)))))...

Structure

caac   a  aa    aagaug   -  --a     -   u   c      U   C         U      ccaauuaa  a       au 
    aac cg  gaag      aag gu   cuuga uga gaa gggUAA CUG AUCCUGAGG UUAaaa        gc uauacau  g
    ||| ||  ||||      ||| ||   ||||| ||| ||| |||||| ||| ||||||||| ||||||        || |||||||   
    uug gc  uuuc      uuc ca   gaacu auu cuu uCCAUU GAC UAGGGCUCC Aauuuu        ug auaugua  c
-guu   -  aa    ----ga   a  aaa     c   c   c      U   A         U      --------  -       ag 

Annotation confidence Not enough data

Genome context

chr5: 400358-400524 [+]

Mature ath-miR2111b-5p

• Accession: MIMAT0011152
• Description: Arabidopsis thaliana ath-miR2111b-5p mature miRNA
• Sequence: 45 - UAAUCUGCAUCCUGAGGUUUA - 65
• Evidence: experimental ; Illumina [1-3]

Mature ath-miR2111b-3p

• Accession: MIMAT0011153
• Description: Arabidopsis thaliana ath-miR2111b-3p mature miRNA
• Sequence: 107 - AUCCUCGGGAUACAGUUUACC - 127
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19307293
   Computational and analytical framework for small RNA profiling by high-throughput sequencing
   "Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC"
   "RNA (2009) 15:992-1002


2. PubMed ID: 19465578
   Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing
   "Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR"
   "Plant Physiol (2009) 150:1541-1555


3. PubMed ID: 19854858
   Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
   "Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ"
   "Plant Physiol (2009) 151:2120-2132