Stem-loop ath-MIR2112

Accession

MI0010632

Description

Arabidopsis thaliana ath-MIR2112 precursor miRNA

Literature search

2 open access papers mention ath-MIR2112
(7 sentences)

Sequence

13051 reads, 89.0 reads per million, 180 experiments

guaugaAAUGAUGCGCAAAUGCGGAUAUcaauguaaaucaggacaacaaaccaauagaggugcucagcgaaaacaacaaaaugugaaaaggguuuaucagaaacauuggggucaugauauacCUUUAUAUCCGCAUUUGCGCAucaucucugac
((..((.(((((((((((((((((((((.((.(((.((((.(((..(((.......((...((((.......(((......))).....))))...)).......)))..))).)))).))).)).))))))))))))))))))))).))..))

Structure

  au  A                     c  u   a    g   aa   accaaua  ggu    agcgaaa   ac 
gu  ga AUGAUGCGCAAAUGCGGAUAU aa gua auca gac  caa       ga   gcuc       aca  a
||  || ||||||||||||||||||||| || ||| |||| |||  |||       ||   ||||       |||   
ca  cu uacuACGCGUUUACGCCUAUA UU cau uagu cug  guu       cu   uggg       ugu  a
  gu  c                     U  C   a    a   gg   acaaaga  auu    --aaaag   aa 

Annotation confidence Medium

Genome context

chr1: 234006-234159 [-]

Mature ath-miR2112-5p

• Accession: MIMAT0011154
• Description: Arabidopsis thaliana ath-miR2112-5p mature miRNA
• Sequence: 7 - AAUGAUGCGCAAAUGCGGAUAU - 28
• Evidence: experimental ; Illumina [1]

Mature ath-miR2112-3p

• Accession: MIMAT0011155
• Description: Arabidopsis thaliana ath-miR2112-3p mature miRNA
• Sequence: 123 - CUUUAUAUCCGCAUUUGCGCA - 143
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19307293
   Computational and analytical framework for small RNA profiling by high-throughput sequencing
   "Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC"
   "RNA (2009) 15:992-1002