Stem-loop bra-MIR157a

Accession

MI0010648

Description

Brassica rapa bra-MIR157a precursor miRNA

Literature search

7 open access papers mention bra-MIR157a
(42 sentences)

Sequence

gugaugcugguugUUGACAGAAGAUAGAGAGCACuaaggaugacaugcaaguacauauguauguaucaucacaccgccuguggaugauuacaaaaauagccugcaugucuacucuuucgugcucucuauacuucugucaccaccauuau
((((((.((((....(((((((((((((((((((.(((((.((((((((.((...(((...(((((((((.(((.....)))))))).))))...))))).))))))))...))))).))))))))))).)))))))))))).))))))

Structure

      c    ugUU        -           u     --u        a  aca   gua    -     a   c 
gugaug uggu    GACAGAAG AUAGAGAGCAC aagga   gacaugca gu   uau   ugua ucauc cac g
|||||| ||||    |||||||| ||||||||||| |||||   |||||||| ||   |||   |||| ||||| ||| c
uauuac acca    cugucuuc uaucucucgug uuucu   cuguacgu cg   aua   acau aguag gug c
      c    ----        a           c     cau        c  ---   aaa    u     -   u 

Annotation confidence Low

Genome context

Unknown

Mature bra-miR157a

• Accession: MIMAT0010152
• Description: Brassica rapa bra-miR157a mature miRNA
• Sequence: 14 - UUGACAGAAGAUAGAGAGCAC - 34
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452


2. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146