Stem-loop bra-MIR160a

Accession

MI0010650

Description

Brassica rapa bra-MIR160a precursor miRNA

Literature search

8 open access papers mention bra-MIR160a
(32 sentences)

Sequence

uauguguaguuguauaagauguguaUGCCUGGCUCCCUGUAUGCCAuccucuaagcucaucgaccauugaugaccuccgugaaugGCGUAUGAGGAGCCAUGCAUAuuuucauauacauuuacauac
..(((((((.((((((.((...((((((.(((((((.((((((((((.(.(..((.(((((((...))))))).))..).).)))))))))).))))))).))))))..)).)))))).))))))).

Structure

ua       u      a  ugu      C       C          c u ua  c       c 
  uguguag uguaua ga   guaUGC UGGCUCC UGUAUGCCAu c c  ag ucaucga  
  ||||||| |||||| ||   |||||| ||||||| |||||||||| | |  || ||||||| c
  auacauu acauau cu   uAUACG ACCGAGG GUAUGCGgua g g  uc aguaguu  
-c       u      a  -uu      U       A          a u cc  c       a 

Annotation confidence Not enough data

Genome context

chrA5: 3222211-3222337 [-]

Mature bra-miR160a-5p

• Accession: MIMAT0010154
• Description: Brassica rapa bra-miR160a-5p mature miRNA
• Sequence: 26 - UGCCUGGCUCCCUGUAUGCCA - 46
• Evidence: experimental ; cloned [1], Northern [1]

Mature bra-miR160a-3p

• Accession: MIMAT0010155
• Description: Brassica rapa bra-miR160a-3p mature miRNA
• Sequence: 86 - GCGUAUGAGGAGCCAUGCAUA - 106
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452