Stem-loop bra-MIR172a

Accession

MI0010661

Description

Brassica rapa bra-MIR172a precursor miRNA

Literature search

14 open access papers mention bra-MIR172a
(58 sentences)

Sequence

cguuuuuuguaggcgcagcaccaucaagauucacauggaaauugaaaaaucuccuaauuuuuaauuaggguuuugauauguauaugAGAAUCUUGAUGAUGCUGCAUcaacaaccgacg
((((..((((.((.((((((.(((((((((((.((((...((...(((((..(((((((...))))))))))))...))...)))).))))))))))).)))))).)).))))..))))

Structure

    uu    a  c      c           a    gaa  uga     cu       u 
cguu  uugu gg gcagca caucaagauuc caug   au   aaaau  ccuaauu  
||||  |||| || |||||| ||||||||||| ||||   ||   |||||  ||||||| u
gcag  aaca cU CGUCGU GUAGUUCUAAG guau   ua   uuuug  ggauuaa  
    cc    a  A      A           A    aug  uag     --       u 

Annotation confidence Not enough data

Genome context

chrA2: 2013332-2013450 [-]

Mature bra-miR172a

• Accession: MIMAT0010166
• Description: Brassica rapa bra-miR172a mature miRNA
• Sequence: 87 - AGAAUCUUGAUGAUGCUGCAU - 107
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452


2. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146