miRBase entry: bra-MIR172b

Stem-loop bra-MIR172b


Accession
MI0010662
Description
Brassica rapa bra-MIR172b precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
14 open access papers mention bra-MIR172b
(50 sentences)

Sequence

uguagguGCAGCACCAUUAAGAUUCACAuggaaauugagaaaacccuaauuuauauuaauuaggguucugauauguauaugAGAAUCUUGAUGAUGCUGCAUcaaca
(((.(((((((((.(((((((((((.((((.....(.(((..(((((((((......)))))))))))).)......)))).))))))))))).))))))))).)))

Structure
   a         C           A    -gaaau g   aa         ua 
ugu gguGCAGCA CAUUAAGAUUC CAug      u aga  acccuaauu  u
||| ||||||||| ||||||||||| ||||      | |||  |||||||||   
aca cUACGUCGU GUAGUUCUAAG guau      a ucu  ugggauuaa  a
   a         A           A    auguau g   --         uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bra-miR172b-5p

Accession MIMAT0010167
Description Brassica rapa bra-miR172b-5p mature miRNA
Sequence 8 - GCAGCACCAUUAAGAUUCACA - 28
Evidence experimental
cloned [1], Northern [1]

Mature bra-miR172b-3p

Accession MIMAT0010168
Description Brassica rapa bra-miR172b-3p mature miRNA
Sequence 82 - AGAAUCUUGAUGAUGCUGCAU - 102
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 18558089
    Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
    "He XF, Fang YY, Feng L, Guo HS"
    "FEBS Lett (2008) 582:2445-2452