Stem-loop ssc-mir-450a

Accession

MI0010683

Description

Sus scrofa ssc-mir-450a precursor miRNA

Literature search

5 open access papers mention ssc-mir-450a
(5 sentences)

Sequence

567025 reads, 461.0 reads per million, 209 experiments

gucugucaaagaaagaugcuaaacuggUUUUGCGAUGUGUUCCUAAUAUgcaguauaaauauAUUGGGAGCAUUUUGCAUGCAUgguuuuguaucacuauacagau
((((((...((...(((((.((((((....(((((.((((((((((((((.........)))))))))))))).)))))....)))))).))))).))..))))))

Structure

      caa  aaa     u      gUUU     U              cag 
gucugu   ag   gaugc aaacug    UGCGA GUGUUCCUAAUAUg   u
||||||   ||   ||||| ||||||    ||||| ||||||||||||||   a
uagaca   uc   cuaug uuuggU    ACGUU UACGAGGGUUAuau   u
      -ua  --a     u      ACGU     U              aaa 

Annotation confidence High

Genome context

chrUScaf3177: 4173-4278 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ssc-mir-450a

Mature ssc-miR-450a-5p

• Accession: MIMAT0010188
• Description: Sus scrofa ssc-miR-450a-5p mature miRNA
• Sequence: 28 - UUUUGCGAUGUGUUCCUAAUAU - 49
• Evidence: experimental ; 454 [1], Illumina [2-3]

Mature ssc-miR-450a-3p

• Accession: MIMAT0052599
• Description: Sus scrofa ssc-miR-450a-3p mature miRNA
• Sequence: 63 - AUUGGGAGCAUUUUGCAUGCAU - 84
• Evidence: experimental ; 454 [1], Illumina [2-3]

References

1. PubMed ID: 19196471
   Cloning, characterization and expression analysis of porcine microRNAs
   Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
   BMC Genomics (2009) 10:65


2. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328