Stem-loop gma-MIR2119

Accession

MI0010697

Description

Glycine max gma-MIR2119 precursor miRNA

Literature search

6 open access papers mention gma-MIR2119
(16 sentences)

Sequence

105181 reads, 281.0 reads per million, 178 experiments

auacuucauuuuuuauacuuuaauuuccUCUAUACCUCACUUUUAUUGGagaaaaaagagaauagaaaauaguggauuucucuucuuuuuuucaaUCAAAGGGAGUUGUAGGGGAAaaguuuagaaaauggcgugu
((((.((((((((((.(((((....(((((((((.(((.(((((((((((((((((((((((...............))))))).))))))))))).)))))))).)))))))))))))).)))))))))).))))

Structure

    u          u     aauu         C   A     -           -       uagaaa 
auac ucauuuuuua acuuu    uccUCUAUA CUC CUUUU AUUGGagaaaa aagagaa      a
|||| |||||||||| |||||    ||||||||| ||| ||||| ||||||||||| |||||||      u
ugug gguaaaagau ugaaA    AGGGGAUGU GAG GGAAA Uaacuuuuuuu uucucuu      a
    c          u     ----         U   -     C           c       uaggug 

Annotation confidence Medium

Genome context

chr1: 7214478-7214613 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR2119

Mature gma-miR2119-5p

• Accession: MIMAT0054056
• Description: Glycine max gma-miR2119-5p mature miRNA
• Sequence: 29 - UCUAUACCUCACUUUUAUUGG - 49
• Evidence: experimental ; unknown

Mature gma-miR2119-3p

• Accession: MIMAT0011167
• Description: Glycine max gma-miR2119-3p mature miRNA
• Sequence: 96 - UCAAAGGGAGUUGUAGGGGAA - 116
• Evidence: not_experimental

References

1. PubMed ID: 19353277
   Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress
   "Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL"
   "Plant Mol Biol (2009) 70:385-401