Stem-loop pvu-MIR166a

Accession

MI0010704

Description

Phaseolus vulgaris pvu-MIR166a precursor miRNA

Literature search

3 open access papers mention pvu-MIR166a
(13 sentences)

Sequence

cuugcaaaggugagguugagaggaauguugucuggcucgaggucauggaggaggagaguucucagauaaacucuuucacccaaaguuuccaauggaaauuuacccucuaacaccaaaaugauucUCGGACCAGGCUUCAUUCCCCccacccaacuuuugcuauu
...((((((((..(((.(.(.((((((..((((((.(((((((((((((((.((((((((........))))))))......((((((((...))))))))..))))).........)))).)))))).))))))..)))))).)).)))..))))))))....

Structure

-cuu        ga   u a a      uu      c      -    ---------     --------------------------a        cuc 
    gcaaaggu  ggu g g ggaaug  gucugg ucgagg ucau         ggagg                           ggagaguu   a
    ||||||||  ||| | | ||||||  |||||| |||||| ||||         |||||                           ||||||||    
    cguuuuca  cca c C CCUUAC  CGGACC GGCUcu agua         ucucc                           uuucucaa   g
uuau        ac   c - C      UU      A      u    aaaccacaa     cauuuaaagguaaccuuugaaacccac        aua 

Annotation confidence Not enough data

Genome context

chr2: 44066654-44066817 [-]

Mature pvu-miR166a

• Accession: MIMAT0011175
• Description: Phaseolus vulgaris pvu-miR166a mature miRNA
• Sequence: 125 - UCGGACCAGGCUUCAUUCCCC - 145
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 19353277
   Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress
   "Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL"
   "Plant Mol Biol (2009) 70:385-401