Dead hairpin entry

Stem-loop osa-MIR2122

Accession

MI0010711

Description

Oryza sativa osa-MIR2122 precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention osa-MIR2122
(4 sentences)

Sequence

77277 reads, 294.0 reads per million, 142 experiments

uuucaaaaauaaccuuuuguucagcgcaaaaucguauagcgcUGAACUUAGACACCUCAGCGCcacgucaacuggcgcugaaugucgugccaccgugaauaggaggcugagucagcgugccaauguacauucagcgucgugcuauuuagcgcugaggugucuaaguuuagugccauauGAUUUGGCGCUGAACAAAAugguaauuuuuuaaa
....((((((.((((((((((((((((.(((((((((.(((((((((((((((((((((((((.......((.((((((((((((((((.(((..(((.(((....)))..)))..))).).))).))))))))))))))........))))))))))))))))))))))))).))))))))).))))))))))))).))).))))))....

Structure

uuuc      a   -             a         a                         -cacguca  u            -   - c   cg   -a   g 
    aaaaau acc uuuuguucagcgc aaaucguau gcgcUGAACUUAGACACCUCAGCGC        ac ggcgcugaaugu cgu g cac  uga  uag a
    |||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||||||        || |||||||||||| ||| | |||  |||  |||  
    uuuuua ugg AAAACAAGUCGCG UUUAGuaua cgugauuugaaucuguggagucgcg        ug cugcgacuuaca gua c gug  acu  guc g
aaau      a   u             G         c                         auuuaucg  -            u   a c   cg   ga   g