Stem-loop osa-MIR2122

Accession

MI0010711

Description

Oryza sativa osa-MIR2122 precursor miRNA

Literature search

2 open access papers mention osa-MIR2122
(4 sentences)

Sequence

29 reads, 20 reads per million, 2 experiments

UUUCAAAAAUAACCUUUUGUUCagcgcaaaaucguauagcgcugaacuuagacaccucagcgccacgucaacuggcgcugaaugucgugccaccgugaauaggaggcugagucagcgugccaauguacauucagcgucgugcuauuuagcgcugaggugucuaaguuuagugccauaugauuuggcgcugaacaaaaugguaauuuuuuaaa
....((((((.((((((((((((((((.(((((((((.(((((((((((((((((((((((((.......((.((((((((((((((((.(((..(((.(((....)))..)))..))).).))).))))))))))))))........))))))))))))))))))))))))).))))))))).))))))))))))).))).))))))....

Structure

UUUC      A   -             a         a                         -cacguca  u            -   - c   cg   -a   g 
    AAAAAU ACC UUUUGUUCagcgc aaaucguau gcgcugaacuuagacaccucagcgc        ac ggcgcugaaugu cgu g cac  uga  uag a
    |||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||||||        || |||||||||||| ||| | |||  |||  |||  
    uuuuua ugg aaaacaagucgcg uuuaguaua cgugauuugaaucuguggagucgcg        ug cugcgacuuaca gua c gug  acu  guc g
aaau      a   u             g         c                         auuuaucg  -            u   a c   cg   ga   g 

Annotation confidence Not enough data

Comments

Huang et al. incorrectly named this sequence miR603 in [1].

Genome context

Chr2: 8715222-8715433 [+]

Mature osa-miR2122

• Accession: MIMAT0011182
• Description: Oryza sativa osa-miR2122 mature miRNA
• Sequence: 1 - UUUCAAAAAUAACCUUUUGUUC - 22
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 19081140
   Heavy metal-regulated new microRNAs from rice
   "Huang SQ, Peng J, Qiu CX, Yang ZM"
   "J Inorg Biochem (2009) 103:282-287