Stem-loop mtr-MIR2199

Accession

MI0010859

Description

Medicago truncatula mtr-MIR2199 precursor miRNA

Sequence

auaugugcugugcaauugugauccguucuaguguaucauacaauucacagcuuaauauugauuaauuccaguuuauuaauuuggaauauauaucuuuugauagaggccuaggucacuaauuuucuuguuuuaauauauuuaagaaaauaucauaugauaucuucaucuuugcuuucuauaucacuuauauaauuaacauguuagcuacauagaucuaugcaauacaguaauuaaauaucauauuacaaaauaucaaauucauacguucuuuuuccuuuguuuuugguugguugagaaaucacuaccauuuuuuguugauacauauaauuagaaaacaaguauauacauauaucaagauuaaccguauaguuuaauggccuuuauaugaaaauuuuuauguucuuaaacuaaacuggaaauauuugagagcugggauauuuuUGAUACACUAGCACGGAUCACcguugugggucacguaaaaaauaaaugggcaugguggugugu
.((((((.(.((((((.(((((((((.(((((((((((....((((.((((((....((((.((.((((((((((.......((((((((....((((.((((((((((((....)))(((((((((............)))))))))...(((((((((......((((((..(((((....((.((((.......)))).))....))))).....))))...)).......)))))))))........((((((..((................))..))))))(((((((....)))..)))).....(((..((((.................))))..))).......((((((......))))))...)))))))))..)))).....)))))))).....)))))))))).)).)))))))))))))).....))))))))))).))))))))).)))))).).))))))..........(.((((....)))).)

Structure

-------------------------a      c g      u         u           -uaca    a      aaua    u  a          uuaauuu        -uauc    -g         -----------------------------------------------------------------------------------------uaggucacuaauuuucuuguuuuaauauauuuaagaaaauauc         -cuucau  ---    ---uu     auca  u    aa 
                          uaugug u ugcaau gugauccgu cuaguguauca     auuc cagcuu    uuga ua uuccaguuua       ggaauaua     uuuu  auagaggcc                                                                                                                                    auaugauau       cu   uugc     ucuau    cu auau  u
                          |||||| | |||||| ||||||||| |||||||||||     |||| ||||||    |||| || ||||||||||       ||||||||     ||||  |||||||||                                                                                                                                    |||||||||       ||   ||||     |||||    || ||||  u
                          augcac g guguug CACUAGGCA GAUCACAUAGU     uagg gucgag    aguu au aaggucaaau       ucuuguau     aaag  uauuuccgg                                                                                                                                    uauacuaua       ga   aacg     agaua    ga ugua  a
uguguggugguacggguaaauaaaaa      u g      c         C           uuuua    -      ----    u  a          --caaau        uuuua    ua         uaauuugauaugccaauuagaacuauauacauauaugaacaaaagauuaauauacauaguuguuuuuuaccaucacuaaagaguugguugguuuuuguuuccuuuuucuugcauacuuaaacuauaaaacau         aauuaau  cau    uaucu     cauc  u    ca 

Annotation confidence Not enough data

Comments

There is a mismatch between the mature miRNA sequence reported in [1] and the genome-derived hairpin flanking sequence (G17->A). The mature sequence is altered here.

Genome context

chr8: 1337108-1337611 [+]

Mature mtr-miR2199

• Accession: MIMAT0011319
• Description: Medicago truncatula mtr-miR2199 mature miRNA
• Sequence: 442 - UGAUACACUAGCACGGAUCAC - 462
• Evidence: experimental ; 454 [1], Northern [1]

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98