Stem-loop sbi-MIR156f

Accession

MI0010860

Description

Sorghum bicolor sbi-MIR156f precursor miRNA

Literature search

8 open access papers mention sbi-MIR156f
(23 sentences)

Sequence

8295038 reads, 47701.0 reads per million, 50 experiments

gcUGACAGAAGAGAGUGAGCACgcaucggccagacugcaucuauauacggcugcuccuggcgagauauggauggauggaugucuaggcgcagcugcuguugcguGCUCACUUCUCUUUCUGUCAGCuc
(((((((((((((((((((((((((.((((.((.((((((((((((...(((......)))...))))))))((((....))))....)))))))))).))))))))))).)))).))))))))))..

Structure

--          -    -           u    c  a    ----------------        acg   gc 
  gcUGACAGAA GAGA GUGAGCACgca cggc ag cugc                aucuauau   gcu  u
  |||||||||| |||| ||||||||||| |||| || ||||                ||||||||   |||   
  CGACUGUCUU CUCU CACUCGugcgu gucg uc gacg                uagguaua   cgg  c
cu          U    U           u    -  -    cggaucuguagguagg        gag   uc 

Annotation confidence High

Genome context

chr2: 59370555-59370682 [+]

Mature sbi-miR156f-5p

• Accession: MIMAT0011320
• Description: Sorghum bicolor sbi-miR156f-5p mature miRNA
• Sequence: 3 - UGACAGAAGAGAGUGAGCAC - 22
• Evidence: not_experimental

Mature sbi-miR156f-3p

• Accession: MIMAT0056395
• Description: Sorghum bicolor sbi-miR156f-3p mature miRNA
• Sequence: 105 - GCUCACUUCUCUUUCUGUCAGC - 126
• Evidence: experimental ; unknown

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556