Stem-loop sbi-MIR164d

Accession

MI0010865

Description

Sorghum bicolor sbi-MIR164d precursor miRNA

Literature search

6 open access papers mention sbi-MIR164d
(14 sentences)

Sequence

839770 reads, 16719.0 reads per million, 50 experiments

UGGAGAAGCAGGGCACGUGCAugcuccuaacuucucgcgcgcuccucuccgccgagauccaucguucaucuauaucuccauggauauggagcuauauauggacuggaucgcggagagaaagcuagcuaguauacugcacgCACGUGUUCUCCUUCUCCAU
((((((((.(((((((((((.(((.........((.((..(((.((((((((...((((((..((((((.((((.((((((....)))))).)))).))))))))))))))))))))..)))..)).))......))).))))))))))).)))))))).

Structure

-        C           A   uccuaacuu  c  gc   -c        cga      uc      c    u      g 
 UGGAGAAG AGGGCACGUGC ugc         cu gc  gcu  cucuccgc   gaucca  guucau uaua cuccau g
 |||||||| ||||||||||| |||         || ||  |||  ||||||||   ||||||  |||||| |||| ||||||  
 ACCUCUUC UCUUGUGCACg acg         ga cg  cga  gagaggcg   cuaggu  caggua auau gaggua a
U        C           c   ---ucauau  u  au   aa        ---      --      u    c      u 

Annotation confidence High

Genome context

chr2: 76208220-76208379 [-]

Mature sbi-miR164d-5p

• Accession: MIMAT0011325
• Description: Sorghum bicolor sbi-miR164d-5p mature miRNA
• Sequence: 1 - UGGAGAAGCAGGGCACGUGCA - 21
• Evidence: not_experimental

Mature sbi-miR164d-3p

• Accession: MIMAT0056399
• Description: Sorghum bicolor sbi-miR164d-3p mature miRNA
• Sequence: 141 - CACGUGUUCUCCUUCUCCAU - 160
• Evidence: experimental ; unknown

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556