Stem-loop sbi-MIR164e

Accession

MI0010866

Description

Sorghum bicolor sbi-MIR164e precursor miRNA

Literature search

5 open access papers mention sbi-MIR164e
(13 sentences)

Sequence

guUGGAGAAGCAGGGCACGUGCAgagacacgccggccggagcacggccgccgccgauagaucgaccucgcacucgcacucgcacaccagcugcgucugcguguggaugaggucgagaucgucgucggucgaagcuagcgaggaaccucuugcuuguugcuucacccgcuagcuccugcacugcacgugcuccccuucuccaccau
(.((((((((..((((((((((((.....((.((((((.....)))))).)).((((...((((((((((((.((((..(((((....).))))..)))).)))..))))))))).))))..((.(((.(((((.((((((.((....)).)))))))))))))).))..((....)).))))))))))))..)))))))).)..

Structure

-- u        CA            ------------------------------agacacgccggccggagcacggccgccgc    aga         --   u    cu    - a 
  g UGGAGAAG  GGGCACGUGCAg                                                           cgau   ucgaccucg  cac cgca  cgca c c
  | ||||||||  ||||||||||||                                                           ||||   |||||||||  ||| ||||  |||| |  
  c accucuuc  cucgugcacguc                                                           gcua   agcuggagu  gug gcgu  gcgu g c
ua c        cc            acguccucgaucgcccacuucguuguucguucuccaaggagcgaucgaagcuggcugcu    --g         ag   u    cu    c a 

Annotation confidence Not enough data

Genome context

chr9: 44994962-44995166 [+]

Mature sbi-miR164e

• Accession: MIMAT0011326
• Description: Sorghum bicolor sbi-miR164e mature miRNA
• Sequence: 3 - UGGAGAAGCAGGGCACGUGCA - 23
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556