Stem-loop sbi-MIR397

Accession

MI0010899

Description

Sorghum bicolor sbi-MIR397 precursor miRNA

Literature search

5 open access papers mention sbi-MIR397
(15 sentences)

Sequence

70644 reads, 3155.0 reads per million, 50 experiments

ucaUUGAGUGCAGCGUUGAUGAGCcagcuggccggccagccgugcguccgccgccggcgccggccacggcUCACCGGCGCUGCACUCAAUU
..((((((((((((((((.((((((.(.((((((((..((((.(((.....)))))))))))))))))))))).)))))))))))))))).

Structure

uc                A      a c        ca    u   u 
  aUUGAGUGCAGCGUUG UGAGCc g uggccggc  gccg gcg c
  |||||||||||||||| |||||| | ||||||||  |||| ||| c
  UAACUCACGUCGCGGC ACUcgg c accggccg  cggc cgc g
-U                C      - -        --    -   c 

Annotation confidence High

Genome context

chr4: 4003721-4003811 [-]

Mature sbi-miR397-5p

• Accession: MIMAT0011359
• Description: Sorghum bicolor sbi-miR397-5p mature miRNA
• Sequence: 4 - UUGAGUGCAGCGUUGAUGAGC - 24
• Evidence: not_experimental

Mature sbi-miR397-3p

• Accession: MIMAT0020940
• Description: Sorghum bicolor sbi-miR397-3p mature miRNA
• Sequence: 71 - UCACCGGCGCUGCACUCAAUU - 91
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. PubMed ID: 21907786
   Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
   "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
   "Genomics (2011) 98:460-468