Stem-loop sbi-MIR408

Accession

MI0010901

Description

Sorghum bicolor sbi-MIR408 precursor miRNA

Literature search

7 open access papers mention sbi-MIR408
(225 sentences)

Sequence

240964 reads, 6498.0 reads per million, 50 experiments

ACAGGGACGAGGCAGAGCAUGggauggggccaucaacaacaaaauuuccaauuuccguuugcuugcccacaaaauggagggacuugucaggagagguaucaggcagagagaaggugccucccuggugaaauggugauggccugagagagcucagcugguguccugguguuguugcuuccucccCUGCACUGCCUCUUCCCUGGCu
.((((((.(((((((.(((.(((...(((((((((.((((((...((((....(((((((...........))))))))))).))))((((.((((((((............))))))))))))......)).)))))))))(((.((((.((((............))))..)))).))))))))).))))))).))))))...

Structure

--A      C       A   U   ------------------------------------aug         a  acaaaauuuccaauuuccguuugcuugcccacaaaauggagggacuugu    a        aggca 
   CAGGGA GAGGCAG GCA Ggg                                       gggccauca ca                                                 cagg gagguauc     g
   |||||| ||||||| ||| |||                                       ||||||||| ||                                                 |||| ||||||||      
   GUCCCU CUCCGUC CGU Ccc                                       uccgguagu gu                                                 gucc cuccgugg     a
uCG      U       A   -   cuccuucguuguugugguccuguggucgacucgagagag         g  -------------------------------------------aaagug    -        aagag 

Annotation confidence High

Genome context

chr3: 15908453-15908657 [+]

Mature sbi-miR408-5p

• Accession: MIMAT0056429
• Description: Sorghum bicolor sbi-miR408-5p mature miRNA
• Sequence: 1 - ACAGGGACGAGGCAGAGCAUG - 21
• Evidence: experimental ; unknown

Mature sbi-miR408-3p

• Accession: MIMAT0011361
• Description: Sorghum bicolor sbi-miR408-3p mature miRNA
• Sequence: 184 - CUGCACUGCCUCUUCCCUGGC - 204
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556