Stem-loop sbi-MIR821a

Accession

MI0010925

Description

Sorghum bicolor sbi-MIR821a precursor miRNA

Sequence

uaaaugauuucagcuaaaaAAGUCAUCAACAUAAAAGUUGuaaaacuggucaagaucuccaauuuuuauuuuagucauuuuuucauaugacaaaguaauaguaacauuguucauaaauuuuacauaucucugauauaguuucauaaacuauaugagagauauguaaaauuuaugaacaauguuacuauuacuuugucggaugaauaaauaaccaaaauaaaaguuguagaucuugaugaguuguacaacuuguauauucauaacuuuaucaacuaaaaucauuua
((((((((((.((.....(((((.((.((.(((.((((((((.((((.((((((((((.(((((((((((((.((.((((.(((((.((((((((((((((((((((((((((((((((((((((((((((.(((((((((...))))))))).)))))))))))))))))))))))))))))))))))))))))))).))))).)))).)).))))))))))))).)))))))))).)))).)))))))).))).)).)).))))).....)).))))))))))

Structure

          c  cuaaa     C  C  C   A        a    g          c             a  c    u     a                                            g         c 
uaaaugauuu ag     aAAGU AU AA AUA AAGUUGua aacu gucaagaucu caauuuuuauuuu gu auuu uucau ugacaaaguaauaguaacauuguucauaaauuuuacauaucucu auauaguuu  
|||||||||| ||     ||||| || || ||| |||||||| |||| |||||||||| ||||||||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| a
auuuacuaaa uc     uuuca ua uu uau uucaacau uuga uaguucuaga guugaaaauaaaa ca uaaa aagua gcuguuucauuaucauuguaacaaguauuuaaaauguauagaga uauaucaaa  
          a  aacua     a  c  a   g        g    g          u             c  a    u     g                                            g         u 

Annotation confidence Not enough data

Genome context

chr1: 54242214-54242498 [+]

Mature sbi-miR821a

• Accession: MIMAT0011385
• Description: Sorghum bicolor sbi-miR821a mature miRNA
• Sequence: 20 - AAGUCAUCAACAUAAAAGUUG - 40
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556