Stem-loop sbi-MIR821b

Accession

MI0010926

Description

Sorghum bicolor sbi-MIR821b precursor miRNA

Sequence

uaaaugauuucagaugaaaAAGUUAUGAACAUAAAAGUUGuagaacugauuaagaucuacaccuuuuauuuuggucauuuguucauccaaugaaaugauaguaacauuguucacaaaauuuauauaucucacucuuauaguuuauaaaaccauaugagagagauguaaaauuuaugaacaauguuaguaucacucuaucggaugaaaaaaugaccaaaauaauaguuauagaucuugaugacuucuauaacuuuguuguugauaacuuuuuca
..............((((((((((((.((((..((((((((((((.(.(((((((((((...((.(((((((((((((((.(((((((.(((...(((((.((((((((((((..((((((.((((((((.(((.(((.((((...)))).))).))).)))))))))))))).)))))))))))).)))))...))).))))))).))))))))))))))).))...))))))))))).).))))))))))))..)))).))))))))))))

Structure

uaaaugauuucaga            G    UA            c g           cac  u               g       a   aaa     g            ca      a        a   u   a    a 
              ugaaaAAGUUAU AACA  AAAGUUGuagaa u auuaagaucua   cu uuauuuuggucauuu uucaucc aug   ugaua uaacauuguuca  aaauuu uauaucuc cuc uau guuu  
              |||||||||||| ||||  |||||||||||| | |||||||||||   || ||||||||||||||| ||||||| |||   ||||| ||||||||||||  |||||| |||||||| ||| ||| |||| u
              acuuuuucaaua uugu  uuucaauaucuu a uaguucuagau   ga aauaaaaccaguaaa aaguagg uau   acuau auuguaacaagu  uuuaaa auguagag gag aua caaa  
--------------            g    ug            c g           auu  u               a       c   cuc     g            -a      -        a   u   c    a 

Annotation confidence Not enough data

Genome context

chr2: 47490066-47490338 [-]

Mature sbi-miR821b

• Accession: MIMAT0011386
• Description: Sorghum bicolor sbi-miR821b mature miRNA
• Sequence: 20 - AAGUUAUGAACAUAAAAGUUG - 40
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556