Stem-loop sbi-MIR821c

Accession

MI0010927

Description

Sorghum bicolor sbi-MIR821c precursor miRNA

Sequence

uaaaugauuuuagcuaaaaAAGUCAUCAACAUAAAAGUUGuagaacuggucaagaucucuaauuuuuauuuuagucauuuuuucauaugacaaaguaauaguaacauuggucauaaauuuuacauaucucugauauaguuucauaaacuauaugagagauauguaaaauuuaugaacaauguuacuauuacuuugccggaugaauaaaugaccagaauaaaaguuguagaucuugaugaguuguacaacuuguauauucaugacuuuaucaccuaaaaucauuua
(((((((((((((.....((((((((.((.(((.((((((((.((((.((((((((((.(((((((((((((.(((((((.(((((.((.(((((((((((((((((((.(((((((((((((((((((((.(((((((((...))))))))).))))))))))))))))))))).))))))))))))))))))).)).))))).))))))).))))))))))))).)))))))))).)))).)))))))).))).)).)))))))).....)))))))))))))

Structure

             cuaaa        C  C   A        g    g          c             a       u     a  a                   g                     g         c 
uaaaugauuuuag     aAAGUCAU AA AUA AAGUUGua aacu gucaagaucu uaauuuuuauuuu gucauuu uucau ug caaaguaauaguaacauug ucauaaauuuuacauaucucu auauaguuu  
|||||||||||||     |||||||| || ||| |||||||| |||| |||||||||| ||||||||||||| ||||||| ||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||| a
auuuacuaaaauc     uuucagua uu uau uucaacau uuga uaguucuaga guugaaaauaaga caguaaa aagua gc guuucauuaucauuguaac aguauuuaaaauguauagaga uauaucaaa  
             cacua        c  a   g        g    g          u             c       u     g  c                   a                     g         u 

Annotation confidence Not enough data

Genome context

chr2: 60192684-60192968 [+]

Mature sbi-miR821c

• Accession: MIMAT0011387
• Description: Sorghum bicolor sbi-miR821c mature miRNA
• Sequence: 20 - AAGUCAUCAACAUAAAAGUUG - 40
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556