Stem-loop sbi-MIR821d

Accession

MI0010928

Description

Sorghum bicolor sbi-MIR821d precursor miRNA

Sequence

aaaAAGUCAUCAACAACAAAGUUGuagaaaucauuaauaucuaaaacuuuuauuuuggucauuuauccauucgauaaagugauagcaacauuguucauaaauuuuacaaaucccucguaugguuucauaaacuauaagagagauauguaaauuuugugaacaauauuacuaucacuuucucggaugaacaaauaccuaaaauaaaaguuguauauauugaugaguucuacaacuuuuauguucaugaauuuuucgaaugaaauc
(((((.((((.((((..((((((((((((.((((((((((.((.(((((((((((((((.((((...(((((((.((((((((((.((.((((((((((((.((((((.(((.(((.((((((((...)))))))).))).))).)))))).)))))))))))).)).)))))))))).)))))))...))))))).)))))))))))).)).)))))))))).))))))))))))..)))).)))).)))))...........

Structure

-----------     G    C    AC            a          c  a            -   c    auc       u          c  c            u      a   c   g        c 
           aaaAA UCAU AACA  AAAGUUGuagaa ucauuaauau ua aacuuuuauuuu ggu auuu   cauucga aaagugauag aa auuguucauaaa uuuaca auc cuc uaugguuu  
           ||||| |||| ||||  |||||||||||| |||||||||| || |||||||||||| ||| ||||   ||||||| |||||||||| || |||||||||||| |||||| ||| ||| |||||||| a
           uuuuu agua uugu  uuucaacaucuu aguaguuaua au uugaaaauaaaa cca uaaa   guaggcu uuucacuauc uu uaacaaguguuu aaaugu uag gag auaucaaa  
cuaaaguaagc     a    c    au            g          u  g            u   -    caa       c          a  a            u      a   a   a        u 

Annotation confidence Not enough data

Genome context

chr6: 29629764-29630027 [+]

Mature sbi-miR821d

• Accession: MIMAT0011388
• Description: Sorghum bicolor sbi-miR821d mature miRNA
• Sequence: 4 - AAGUCAUCAACAACAAAGUUG - 24
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556